| 1 |
rule___100_400_001_01 |
ERROR |
There is a critical file parse error for the metabolite assignment file. |
There is a critical file parse error for the metabolite assignment file. |
| 2 |
rule___100_400_001_02 |
ERROR |
There is a file parse error for the metabolite assignment file. |
There is a file parse error for the metabolite assignment file. |
| 3 |
rule___100_400_001_03 |
WARNING |
There is a file parse warning for the metabolite assignment file. |
There is a file parse warning for the metabolite assignment file. |
| 4 |
rule___100_400_001_04 |
ERROR |
There is no parser information for metabolite assignment file. |
Define metabolite assignment file in parserMessages. |
| 5 |
rule___100_400_001_05 |
ERROR |
Technology type not defined for metabolite assignment file. |
Assignment file technology type must be defined to execute file type validation rules. |
| 6 |
rule___100_400_001_06 |
ERROR |
Metabolite assignment file is not referenced in assay file(s). |
Update assay files to reference the metabolite assignment or delete it. |
| 7 |
rule___100_400_001_07 |
ERROR |
Metabolite assignment file name not correct pattern. |
Metabolite assignment file name must start with 'm_' and have extension '.tsv'. |
| 8 |
rule___100_400_001_08 |
ERROR |
Metabolite assignment file name contains invalid characters. |
Use only .-_A-Za-z0-9 characters for an metabolite assignment file name. e.g. m_REQ2025010211233_LC-MS_negative_reverse-phase_metabolite_profiling_v2_maf.tsv |
| 9 |
rule_m_100_100_001_01 |
ERROR |
Default columns not in metabolite assignment file. |
Default columns must exist in metabolite assignment file. |
| 10 |
rule_m_100_100_001_02 |
ERROR |
Unordered columns in metabolite assignment file. |
Unordered columns in metabolite assignment file. |
| 11 |
rule_m_100_100_001_03 |
ERROR |
Empty columns in metabolite assignment file. |
Empty columns must not exist in metabolite assignment file. All column headers should be defined. |
| 12 |
rule_m_100_100_001_04 |
ERROR |
Default column header name is not unique in the metabolite assignment file. |
Default column header name should be unique in the metabolite assignment file. |
| 13 |
rule_m_100_100_002_01 |
WARNING |
Sample Name columns not in metabolite assignment file. |
Sample Name columns must exist in metabolite assignment file. |
| 14 |
rule_m_100_100_002_02 |
WARNING |
MS Assay Name or NMR Assay Name columns not in metabolite assignment file |
If Sample Name columns do not exist, MS Assay Name or NMR Assay Name columns should be defined in metabolite assignment file. |
| 15 |
rule_m_100_100_004_01 |
ERROR |
Metabolite assignment file not referenced in assay file. |
Metabolite assignment file must be referenced in assay file. |
| 16 |
rule_m_100_100_005_01 |
ERROR |
Metabolite assignment file name not correct pattern. |
Metabolite assignment file name must start with 'm_' and have extension '.tsv'. |
| 17 |
rule_m_100_100_006_01 |
ERROR |
There is no row in metabolite assignment file. |
No row is defined in metabolite assignment file. Add more than one row (assignment). Please ensure all xxx, including controls, QCs, standards, etc, are referenced. |
| 18 |
rule_m_100_100_006_02 |
ERROR |
There is only one row in metabolite assignment file. |
Only one row is defined in metabolite assignment file. Add more than one row (assignment). Please ensure all xxx, including controls, QCs, standards, etc, are referenced. |
| 19 |
rule_m_300_090_001_01 |
ERROR |
Values with trailing or leading spaces in metabolite assignment file. |
Values in metabolite assignment file should not start or end with space characters. |
| 20 |
rule_m_300_090_005_01 |
ERROR |
Values for required columns not in metabolite assignment file. |
All required column values should be defined in metabolite assignment file. |
| 21 |
rule_m_300_090_005_02 |
ERROR |
Values do not meet minimum length requirement. |
Each row must have a value equal or greater than the minimum length. |
| 22 |
rule_m_300_090_005_03 |
ERROR |
Values do not meet maximum length requirement. |
Each row must have a value equal or less than the maximum length. |
| 23 |
rule_m_300_100_001_01 |
ERROR |
mass_to_charge column has empty values in metabolite assignment file. |
All 'mass_to_charge' column values must be defined in metabolite assignment file. |
| 24 |
rule_m_300_100_001_02 |
ERROR |
retention_time column has empty values in metabolite assignment file. |
All 'retention_time' column values must be defined in metabolite assignment file for LC-MS / GC-MS. |
| 25 |
rule_m_300_100_001_03 |
WARNING |
retention_time column values not numeric in metabolite assignment file. |
All 'retention_time' column values should be numeric. |
| 26 |
rule_m_300_200_001_01 |
WARNING |
chemical_shift column has empty values in metabolite assignment file. |
All 'chemical_shift' column values should be defined in metabolite assignment file. |
| 27 |
rule_m_300_200_001_02 |
WARNING |
chemical_shift column values not numeric in metabolite assignment file. |
All 'chemical_shift' column values should be numeric in metabolite assignment file. |
| 28 |
rule_m_300_200_001_03 |
WARNING |
multiplicity column has empty values in metabolite assignment file. |
All 'multiplicity' column values should be defined in metabolite assignment file. |