| 1 |
rule_f_400_090_001_01 |
ERROR |
Referenced data files not within study FILES folder. |
Referenced data files must exist within study FILES folder. Reference data files with format FILES/(sub folder if exists)/(file name) in assay file. |
| 2 |
rule_f_400_090_001_02 |
ERROR |
Referenced data files do not start with FILES/ prefix. |
Reference data files with format FILES/(sub folder if exists>>/(file name>> in assay file. |
| 3 |
rule_f_400_090_001_03 |
ERROR |
Referenced data files contain invalid characters. There are invalid characters in a referenced file name. |
Use only .- _A-Za-z0-9 characters as a referenced data file name. |
| 4 |
rule_f_400_090_001_04 |
ERROR |
Data files contain zero byte data. |
Check data files and re-upload. |
| 5 |
rule_f_400_090_001_07 |
ERROR |
Folders are referenced in assay file. |
Folder reference in data file column is not allowed. If data file type is a folder, compress it with zip utility tool and reference compressed data file. |
| 6 |
rule_f_400_090_001_08 |
ERROR |
A file in NMR raw data folder is referenced in assay file. |
Only .zip files are allowed in this column. If data file or its parent is a raw data folder, compress it with zip utility tool and reference only compressed data file (e.g. 0011/fid -> 0001.zip, 0001/acqu -> 0001.zip). |
| 7 |
rule_f_400_090_001_09 |
ERROR |
Uploaded data file names contain invalid characters. |
Use only .-_A-Za-z0-9 characters for data file name. |
| 8 |
rule_f_400_090_002_01 |
WARNING |
Referenced raw data files not within RAW_FILES folder. |
Referenced raw data files should be located within FILES/RAW_FILES/(sub folder if exists>>/(file name>> and upload your data to appropriate folder. |
| 9 |
rule_f_400_090_003_01 |
WARNING |
Referenced derived data files not within DERIVED_FILES folder. |
Reference your derived file DERIVED_FILES/(sub folder if exists>>/(file name>> and upload your data to appropriate folder. |
| 10 |
rule_f_400_100_001_01 |
ERROR |
Metadata files within study FILES folder. |
Metadata files must not exist within study FILES folder. Review and delete/move metadata files. |
| 11 |
rule_f_400_100_001_02 |
WARNING |
Multiple referenced data files with the same name within different folders. |
Review referenced file names and make referenced file names unique. |
| 12 |
rule_f_400_100_001_03 |
WARNING |
Derived data files not referenced in assay file. |
Derived data files should be referenced in assay file. |
| 13 |
rule_f_400_100_001_04 |
WARNING |
Raw data files not referenced in assay file. |
Raw data files should be referenced in assay file. |
| 14 |
rule_f_400_100_001_05 |
ERROR |
Data files with .aspx extensions within study FILES folder. |
Data files with .aspx extensions must not exist within study FILES folder. Check Aspera upload completed successfully. |
| 15 |
rule_f_400_100_001_06 |
ERROR |
Data files with .wiff extensions but no data files with .wiff.scan extensions within study FILES folder. |
Data files with .wiff.scan extensions often accompany data files with .wiff extensions within study FILES folder. Check referenced data files and re-upload. |
| 16 |
rule_f_400_100_001_07 |
ERROR |
Unexpected files / folders within study root folder. |
Only reference metadata files and FILES folder are allowed within study root folder. Sample and assay files must be referenced in i_Investigation.txt. All metabolite Assignment files must be referenced in assay files. Multiple investigation files and all other files are not allowed. |
| 17 |
rule_f_400_100_001_08 |
ERROR |
Data files with .imzML extensions but no data files with .ibd extensions within study FILES folder. |
Data files with .ibd extensions often accompany data files with .imzML extensions within study FILES folder. Check referenced data files and re-upload. |