MSImaging Assay File Default Structure v1.0¶
Download file template as zip file or txt file
| Header | Column Structure | Constraints | Description |
Examples |
|---|---|---|---|---|
| Sample Name | single column | Required MinLength: 1 Controls |
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| Protocol REF | single column | Required Default: Preparation |
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| Parameter Value[Sample mounting] | single column | Required MinLength: 1 |
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| Parameter Value[Sample preservation] | single column | Required MinLength: 1 |
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| Parameter Value[Tissue modification] | single column | Required MinLength: 1 |
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| Parameter Value[Sectioning instrument] | single column | |||
| Parameter Value[Section thickness] | single column and unit ontology | |||
| Parameter Value[Matrix] | single column | |||
| Parameter Value[Matrix application] | single column | |||
| Extract Name | single column | |||
| Labeled Extract Name | single column | |||
| Protocol REF | single column | Required Default: Mass spectrometry |
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| Parameter Value[Scan polarity] | single column | Required MinLength: 1 Controls |
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| Parameter Value[Scan m/z range] | single column | Required MinLength: 1 |
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| Parameter Value[Instrument] | single column | Required MinLength: 1 |
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| Parameter Value[Instrument manufacturer] | single column | |||
| Parameter Value[Ion source] | single column | Required MinLength: 1 |
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| Parameter Value[Mass analyzer] | single column | Required MinLength: 1 Controls |
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| Parameter Value[Solvent] | single column | Required MinLength: 1 |
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| Parameter Value[Target material] | single column | |||
| Parameter Value[Spatial resolution] | single column and unit ontology | |||
| Parameter Value[Pixel size x] | single column and unit ontology | |||
| Parameter Value[Pixel size y] | single column and unit ontology | |||
| Parameter Value[Max count of pixel x] | single column | |||
| Parameter Value[Max count of pixel y] | single column | |||
| Parameter Value[Max dimension x] | single column and unit ontology | |||
| Parameter Value[Max dimension y] | single column and unit ontology | |||
| Parameter Value[Inlet type] | single column | |||
| Parameter Value[Detector] | single column | |||
| Parameter Value[Detector mode] | single column | |||
| Parameter Value[Resolving power] | single column | Required MinLength: 1 |
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| Parameter Value[Resolving power m/z] | single column | Required MinLength: 1 |
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| Parameter Value[Native spectrum identifier format] | single column | |||
| Parameter Value[Data file content] | single column | |||
| Parameter Value[Spectrum representation] | single column | |||
| Parameter Value[Raw data file format] | single column | |||
| Parameter Value[Instrument software] | single column | |||
| Parameter Value[Instrument software version] | single column | |||
| Parameter Value[Line scan direction] | single column | Required MinLength: 1 |
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| Parameter Value[Linescan sequence] | single column | Required MinLength: 1 |
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| Parameter Value[Scan pattern] | single column | Required MinLength: 1 |
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| Parameter Value[Scan type] | single column | Required MinLength: 1 |
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| Parameter Value[Number of scans] | single column | |||
| MS Assay Name | single column | Controls | ||
| Raw Spectral Data File | single column | |||
| Protocol REF | single column | Required Default: Histology |
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| Parameter Value[Stain] | single column | |||
| Parameter Value[High-res image] | single column | |||
| Parameter Value[Low-res image] | single column | |||
| Protocol REF | single column | Required Default: Data transformation |
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| Normalization Name | single column | |||
| Derived Spectral Data File | single column | |||
| Parameter Value[Data Transformation software] | single column | |||
| Parameter Value[Data Transformation software version] | single column | |||
| Protocol REF | single column | Required Default: Metabolite identification |
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| Data Transformation Name | single column | |||
| Metabolite Assignment File | single column | Required MinLength: 1 |